Index

_

_df (teilab.datasets.Samples attribute)

_group_names (teilab.datasets.Samples attribute) _group_numbers (teilab.datasets.Samples attribute)

A

ANNO_COLNAMES (teilab.datasets.TeiLabDataSets attribute) anova() (in module teilab.statistics)

ask() (in module teilab.question) assign_rank() (in module teilab.utils.math_utils)

B

boxplot() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly)

C

calibration_curve_plot() (in module teilab.pcr) check_supported() (in module teilab.utils.generic_utils) CHUNK_SIZE (teilab.utils.download_utils.GoogleDriveDownloader attribute)

Condition (teilab.datasets.Samples attribute) cumulative_density_plot() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly)

D

decide_downloader() (in module teilab.utils.download_utils) decide_extension() (in module teilab.utils.download_utils) density_plot() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly) dict2str() (in module teilab.utils.generic_utils)

does_H0_hold (teilab.statistics.TestResult attribute) download_file() (teilab.utils.download_utils.Downloader class method) download_target_file() (teilab.utils.download_utils.Downloader static method) (teilab.utils.download_utils.GoogleDriveDownloader static method) Downloader (class in teilab.utils.download_utils) DRIVE_URL (teilab.utils.download_utils.GoogleDriveDownloader attribute)

E

expression_ratio_plot() (in module teilab.pcr)

F

f_test() (in module teilab.statistics) FileName (teilab.datasets.Samples attribute)

filePaths (teilab.datasets.TeiLabDataSets property) friedman_test() (in module teilab.statistics)

G

get_colorList() (in module teilab.utils.plot_utils) get_data() (teilab.datasets.TeiLabDataSets method) get_filePaths() (teilab.datasets.TeiLabDataSets method) get_group_numbers() (teilab.datasets.Samples method)

get_matched_mRNAs() (in module teilab.seedmatch) GoogleDriveDownloader (class in teilab.utils.download_utils) grouping() (teilab.datasets.Samples method) groups (teilab.datasets.Samples property)

I

init() (teilab.datasets.TeiLabDataSets method)

K

kruskal_wallis_test() (in module teilab.statistics)

M

mann_whitney_u_test() (in module teilab.statistics) MAplot() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly) median_polish() (in module teilab.normalizations) median_polish_group_wise() (in module teilab.normalizations) module teilab teilab.datasets teilab.enrichment teilab.normalizations teilab.pcr teilab.plot teilab.plot.matplotlib teilab.plot.plotly teilab.question teilab.seedmatch teilab.statistics teilab.utils teilab.utils.download_utils teilab.utils.generic_utils teilab.utils.math_utils teilab.utils.plot_utils

N

now_str() (in module teilab.utils.generic_utils)

O

optimize_linear() (in module teilab.utils.math_utils)

P

paired_t_test() (in module teilab.statistics) percentile() (in module teilab.normalizations) plot() (teilab.statistics.TestResult method)

prepare_for_download() (teilab.utils.download_utils.Downloader static method) (teilab.utils.download_utils.GoogleDriveDownloader static method) print (teilab.datasets.TeiLabDataSets attribute) progress_reporthook_create() (in module teilab.utils.generic_utils)

Q

quantile() (in module teilab.normalizations)

R

read() (teilab.datasets.TeiLabDataSets method) read_data() (teilab.datasets.TeiLabDataSets method) read_meta() (teilab.datasets.TeiLabDataSets method)

read_summary() (teilab.datasets.TeiLabDataSets method) readable_bytes() (in module teilab.utils.generic_utils) reliable_filter() (teilab.datasets.TeiLabDataSets static method) root (teilab.datasets.TeiLabDataSets attribute)

S

sample (teilab.datasets.TeiLabDataSets attribute) SampleNumber (teilab.datasets.Samples attribute) Samples (class in teilab.datasets)

satisfied (teilab.datasets.TeiLabDataSets property) show_groups() (teilab.datasets.Samples method) student_t_test() (in module teilab.statistics) subplots_create() (in module teilab.utils.plot_utils)

T

TARGET_COLNAME (teilab.datasets.TeiLabDataSets attribute) TARGET_GeneName (teilab.datasets.TeiLabDataSets attribute) TARGET_SystematicName (teilab.datasets.TeiLabDataSets attribute) teilab module teilab.datasets module teilab.enrichment module teilab.normalizations module teilab.pcr module teilab.plot module teilab.plot.matplotlib module teilab.plot.plotly module

teilab.question module teilab.seedmatch module teilab.statistics module teilab.utils module teilab.utils.download_utils module teilab.utils.generic_utils module teilab.utils.math_utils module teilab.utils.plot_utils module TeiLabDataSets (class in teilab.datasets) TestResult (class in teilab.statistics) tiecorrect() (in module teilab.utils.math_utils) trace_transition() (in module teilab.utils.plot_utils)

U

unzip() (in module teilab.utils.download_utils)

update_layout() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly)

V

verbose (teilab.datasets.TeiLabDataSets attribute)

verbose2print() (in module teilab.utils.generic_utils)

W

welch_t_test() (in module teilab.statistics)

wilcoxon_test() (in module teilab.statistics)

X

XYplot() (in module teilab.plot.matplotlib) (in module teilab.plot.plotly)